Allen Institute for Neural Dynamics
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aind-ephys-pipeline
aind-ephys-pipeline PublicAIND pipeline for processing extracellular electrophysiology data
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aind-data-schema
aind-data-schema PublicA library that defines AIND data schema and validates JSON.
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openscope-community-predictive-processing
openscope-community-predictive-processing PublicThis repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.
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aind-ephys-spikesort-kilosort25-full
aind-ephys-spikesort-kilosort25-full PublicCodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.
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supervoxel-loss
supervoxel-loss PublicEfficient connectivity-preserving loss function for training neural networks to perform instance segmentation.
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ibl-ephys-alignment-gui
ibl-ephys-alignment-gui PublicForked from int-brain-lab/iblapps
Tool for aligning electrophysiological features to anatomical landmarks
Repositories
- LC-beh-physiology-analysis Public
- Aind.Behavior.VrForaging.Packaging Public
A repository to package primary data from Aind.Behavior.VrForaging
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- aind-pavlovian-data-utils Public
Tools for the analysis of behavior and neural data from the Pavlovian task
- aind-hcr-pairwise-unmixing-calibrated Public
Calibrated pairwise crosstalk removal for thick-tissue HCR spot tables. Standalone; does not modify aind-spot-spectral-unmixing.
- dynamic-foraging-processing Public
A library for processing dynamic foraging behavior data acquired on the new acquisition standard
- package-brain-atlas-assets Public
Reorganize various brain atlas data assets into a standard organization and metadata convention.
- aind-behavior-video-transformation Public
Library to manage compression and transformation of behavior videos
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